Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015899198.1_cds_XP_016449172.1_43756
CDS Infomation

[gene=LOC107774206] [db_xref=GeneID:107774206] [protein=pentatricopeptide repeat-containing protein At5g25630-like isoform X2] [protein_id=XP_016449172.1] [location=complement(join(80890..81780,82534..83427,86089..86193))] [gbkey=CDS]
Sequence

ATGGATGATTTTGGAAAAGAAAGGCAAAACTGTGAAACATATCGCAAGAAGTCGGGTATG
AGGACCCTTATCAGAAAAGAGTGGCTGCATGCATCACCAATCAAGGAAAAAGATCCAGAC
GATAAGATGCCACTGCGACCAACACCTGAATCTGGCCACTGCACCTTTTGTGTGAATGGT
AATAGCTGTAGAACTGTTCGCTCAAGAACAAAACTGATGAACACTGTTTTAGAAAGAGGG
AGGCCCAAGGAAGCCGAGCTGATCTTTGATAGTTTGATTAAAGGAGGGCATAAACCATCT
CTAATTACATACACTACCCTCTTAGCAGCTTTGACAGCCCAGAAGCGTTTCAATCACATC
CATTCCATTATATCTGAAGTGCAAGAAAATGGTATGAATCCAGATCCAGTTTTCTTCAAT
GCTGTTGTTAATGCGTTTTCTGAATCTGGAAACATGGAGGAAGCAATGAAAGCCTTCTTA
CAAATGAAGGAGAGTGGGATAAAGCCTGCAATCAGCACTTTTAATACTTTGATCAAAGGG
TATGGAATTGCTGGAAAGCCTGAAGAATCTATAAAGATAATGGAGTTAATGTTGCAGGAA
GTTAATGTGGAACCAAATCTGAGGACATACAATGTACTTGTTAAAGCATGGTGTAACAAA
AAGAATTTTGCTGATGCATGGAATACTGTGGATAAGATGATAGCTTGTGGTTTACGACCG
GATGTTATCACTTACAATACGATAGCAGCAGCTTATAGTCAAAATCATCAAACTGAAAAG
GCGGAAAGAGTGATTTTAGAAATGCAAAGGAACAATGTGCACCCTAACGAAAGGACTTGT
GGCATCATTATATCTGGATACTGTAAAGAAGGTAAAATAAAGGATGCCTTGATGTTTGTG
TACAAGATGAAGGATCTTGGAATACATCCTAACCTTGTCATTTTCAATTCACTGATCAAA
GGCTTCCTTGACATGTCAGACGGAGACAGTGTTGATGAGGTTCTTACATTAATGGAAGAG
TTCGGTGTCAAACCTGATGTCATTACATTCAGCACCATCATGAATGCCTGGGGTACTGCA
GGATATATGGCTAAGTGCAGGGAGGTCTTCGATGACATGGTCGAAGCTGGCATTCAACCT
GATGTCCACGCGTATAGCATTTTGGCCAAGGGTTACGTTCGTGCAATGGAACCAGAAAAA
GCAGAAGAAGTCCTGAATACCATGGTTAAATCTGGGAACCCTCCAAATGTTGTGATTTTC
ACTACTGTAATTAGTGGATGGTGCACTGCTTGTAGAATGGATTGTGCAATGAGGATCTTC
GAGTGGATGTGCGAGTGTGGGATATCTCCTAATCTGAAAGCTTTTGAAACTCTGATATGG
GGTTATGCTGAAAATAAAAAGCCTCGGGAAGCGCAAGAGGTAATCCAAATCATGGAAAAA
TTCAACATTCAACCAGAGGAAAGCACTTATATGCTTGTTGAAGAAGCCTGTCGTGGTGTC
GGATTAGCTGAGGCAGCAAATGGAGTGGCCAACTCAGTTGAAAAGCAAAACTTGACTAGT
AAAGTTGATATGGAAGGCGTGGCAGAAGTGGAGAACTTGGAAAAAGTCTACCAGAAGAAT
GCTGTCCATCATTTTTATCCCAAATTGTTGCAGATACCCAATGAACTAATTAATGAACCA
AAGGGACCAGTAAGTGCAGCCAAAAGAAGTCGTATGGTGCTAAGGGAAGCTGAATTTTCA
TCTGATACTTTGTCTGCTGCGACAAGATCATTGCATATTAGCTGTAAACTTGGAATGCGG
GCTCCTGTTGTTTGCCAGAGACAATTTCAAGTGCAGCTTTGTGCATCTGGTCAGGTTGGA
AACTCATGTACAGCTGTGTTCTTGAACTGA

Peptide Sequence

PEP ID

XP_016449172.1
PEP Infomation

PREDICTED: pentatricopeptide repeat-containing protein At5g25630-like isoform X2 [Nicotiana tabacum]
Sequence

MDDFGKERQNCETYRKKSGMRTLIRKEWLHASPIKEKDPDDKMPLRPTPESGHCTFCVNG
NSCRTVRSRTKLMNTVLERGRPKEAELIFDSLIKGGHKPSLITYTTLLAALTAQKRFNHI
HSIISEVQENGMNPDPVFFNAVVNAFSESGNMEEAMKAFLQMKESGIKPAISTFNTLIKG
YGIAGKPEESIKIMELMLQEVNVEPNLRTYNVLVKAWCNKKNFADAWNTVDKMIACGLRP
DVITYNTIAAAYSQNHQTEKAERVILEMQRNNVHPNERTCGIIISGYCKEGKIKDALMFV
YKMKDLGIHPNLVIFNSLIKGFLDMSDGDSVDEVLTLMEEFGVKPDVITFSTIMNAWGTA
GYMAKCREVFDDMVEAGIQPDVHAYSILAKGYVRAMEPEKAEEVLNTMVKSGNPPNVVIF
TTVISGWCTACRMDCAMRIFEWMCECGISPNLKAFETLIWGYAENKKPREAQEVIQIMEK
FNIQPEESTYMLVEEACRGVGLAEAANGVANSVEKQNLTSKVDMEGVAEVENLEKVYQKN
AVHHFYPKLLQIPNELINEPKGPVSAAKRSRMVLREAEFSSDTLSAATRSLHISCKLGMR
APVVCQRQFQVQLCASGQVGNSCTAVFLN

Transcript Sequence

Gene sequence data has not been registered.